Not sure if this is the problem with yours but, new VW engine mounts have a centre bush which is too long, and doesn’t allow any compression on the rear C-mount (gearbox mount) rubber, meaning the rubber is fairly pointless!
I’ve taken them out on a few cars and cut 5-10mm off the metal bush, allowing you to compress the rubber, and thus raise the engine angle at the back (which is dropped when fitting a subframe).
Other than that, the usual TCA bushes, compression strut rose joints (new ones from Rally Design £15 a pop I think) check as Chris says all bolts are tight (I paint penned all of them) and check your offside front TCA mount to chassis. From memory the rear TCA bolts holes on your car had been elongated by a muppet, check the TCA bolt isn’t rattling around in there too.